Plant MITE

SE3020367

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_504
Malus domestica
SE3020367
Mutator
MadM4
MDC019086.249:3640-3815
AAGTTCAAT
TGACTAATGCTAGGTAGACTAAAGTTGCAAACTAAATG

Secondary structure and sequence

TSD TIR

5'

3'

AAGTTCAA  AC          T        G   --------------C               - CACCAATACAAAATAAGCACGTTAATCA
        TG  TAATGCTAGG AGACTAAA TTG               AAACTAAATGATGTG T                            
        ||  |||||||||| |||||||| |||               ||||||||||||||| |                            A
        AC  ATTACGATCT TCTGATTT AAC               TTTGATTTGCTGTAA T                            
TAACTTGA  CC          C        A   AAGTAATTTAAAACA               C TCAAATACTAATCTAATAATGAATTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020367

AAGTTCAATGACTAATGCTAGGTAGACTAAAGTTGCAAACTAAATGATGTGTCACCAATACAAAATAAGCACGTTAATCAACATTTAAGTAATAATCTAATCATAAACTTCAATGTCGTTTAGTTTACAAAATTTAATGAACAAATTTAGTCTCTCTAGCATTACCCAAGTTCAAT

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