SE3050369

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_506
  • Malus domestica
  • SE3050369
  • PIF/harbinger
  • MadP7
  • MDC017474.432:27166-27406
  • TAA
  • AGGGCTCGTTTAGATGTGCTTTTAAAATGACTGAAAGTGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA           A                                  A AAAATGTTTTTGGGTTCCAAAAGCACTTAAAGTGCTTTCTGCAAGAAGCACCAATTTTGTGCTTCTCCCAA
  AGGGCTCGTTT GATGTGCTTTTAAAATGACTGAAAGTGCTTTTAG G                                                                       
  ||||||||||| |||||||||||||||||||||||||||||||||| |                                                                        
  TCTCGAGCAAA CTATACGAAAATTTTACTGATTTTCGTGAAAACC A                                                                       
AA           C                                  - TTTTTARAAAAATCTTGGTTAGGAATCATTTTTACGTTCATTTAGGACTTTTTTTTGTGAATTTCACGAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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