SE3020379

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_516
  • Malus domestica
  • SE3020379
  • Mutator
  • MadM80
  • MDC007134.373:26682-26845
  • TAACTTTAG
  • TTAGGGGTGTGCTATCCARGCACCCTATTTTACTTCTTACACACATCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAACT           C   C  R                C     C  A    ATTAA    TATR     ATTTTCTTCAA
     TTAGGGGTGTG TAT CA GCACCCTATTTTACTT TTACA AC TCTT     TTTC    CGTTG           
     ||||||||||| ||| || |||||||||||||||| ||||| || ||||     ||||    |||||            
     AATCCCCACAC ATA GT TGTGGGATAAAATGAA AGTGT TG GGAA     AAAG    GCAAC           
ATTTC           T   A  G                A     A  -    GATCA    -CCS     CTAGRCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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