Plant MITE

SE3020380

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_517
Malus domestica
SE3020380
Mutator
MadM20
MDC017338.211:6965-7178
ATTTCCAAA
GGATTTGGACCTCTTCGAGCCAATTGGTCGGATCCTGCTGACTGGTGTCTGTGGATCGTTGAATTTTTATCCAACAGCTACAATTAT

Secondary structure and sequence

TSD TIR

5'

3'

ATTTCCAAA         -          C          -      G      G          ATC                  A       T   TATAA   TT
         GGATTTGGA CCTCTTCGAG CAATTGGTCG GATCCT CTGACT GTGTCTGTGG   GTTGAATTTTTATCCAAC GCTACAA TAT     CTT  
         ||||||||| |||||||||| |||||||||| |||||| |||||| ||||||||||   |||||||||||||||||| ||||||| |||     |||   
         CCTAAACCT GGAGAGGTTC GTTAACCAGC CTAGGA GACTGG CACAGACACC   CAACTTAAAAATAGGTTG TGATGTT GTG     GAA  
AAACCTTTA         A          C          T      G      A          CGA                  C       T   CTCTA   GA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020380

ATTTCCAAAGGATTTGGACCTCTTCGAGCCAATTGGTCGGATCCTGCTGACTGGTGTCTGTGGATCGTTGAATTTTTATCCAACAGCTACAATTATTATAACTTTTAGAAGATCTCGTGTTTGTAGTCGTTGGATAAAAATTCAACAGCCCACAGACACAGGTCAGGAGGATCTCGACCAATTGCCTTGGAGAGGATCCAAATCCATTTCCAAA

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