SE3020381

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_518
  • Malus domestica
  • SE3020381
  • Mutator
  • MadM20
  • MDC020238.59:5819-6034
  • TTTGTCCTC
  • GGATTTGGATCCTCTCCTGAGCTAATGGAGAGGATCCTCCTGACTAATCATCGTGGACCGTTGGATTTTTATCCAACGGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTGTCCTC                                    C         ATC                                 CAAAC    GGTCCCTTTA
         GGATTTGGATCCTCTCCTGAGCTAATGGAGAGGATC TCCTGACTA   ATCGTGGACCGTTGGATTTTTATCCAACGGTTA     AGGG          
         |||||||||||||||||||||||||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||     ||||           
         CCTAAACCTAGGAGAGGACTCGATTACTTCTCCTAG AGGACTGGT   TAGTACCTGGCAACTTAAAAATAGGTTGCCGAT     TTAA          
CTCCTGTTT                                    A         CAA                                 ----A    TAATATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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