SE3020383

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_520
  • Malus domestica
  • SE3020383
  • Mutator
  • MadM14
  • MDC006753.495:2452-2900
  • TTTTGCAAA
  • TTTGCAAAGAGTAAATTGTAGCAATGGTCCCTCAATTGTAATTAAATTAGAGCAATGGTCTTTCAACTAAAAATTTATTATTGGTCCCTCAACTCATC

Secondary structure and sequence

TSD    TIR
5'



3'
T        -                        C    G     A    A  GC        T                   ---     CC      --C   AAAATGT        -- A -    ----------- TC   TTCGTCAAAATTTTGTCAAAATGAATTATGTTAGAATGACCATTACTACAATTGAGGTTCCTCAACTCATCAAAACGTGTTGTTATGGTCATT
 TTTGCAAA GAGTAAATTGTAGCAATGGTCCCT AATT TAATT AATT GA  AATGGTCT TCAACTAAAAATTTATTAT   TGGTC  TCAACT   ATC       GTAGTGGT  C T TTTC           G  AAC                                                                                             
 |||||||| |||||||||||||||||||||||| |||| ||||| |||| ||  |||||||| |||||||||||||||||||   |||||  ||||||   |||       ||||||||  | | ||||           |  |||                                                                                              
 AAACGTTT CTCATTTAACATCGTTACCAGGGA TTAA ATTGA TTAA TT  TTACTAGG AGTTGATTTTTAAGTAATG   ACCAG  AGTTGA   TAG       GTTGATCT  T T TCAG           T  GGG                                                                                             
         T                        A    A     G    C  AA        T                   ATA     AT      AAT   -------        CT - A    GGAATTGAAAT --   TTAATCTCGTTACTAAATAGTTGAAATTGGATTAACATCGTTACCAGGAAGGTTGTATTGAGTAAAACAGTTTTAAGATTGCTTTAACTGTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End