SE3040384

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_521
  • Malus domestica
  • SE3040384
  • CACTA
  • MadC1
  • MDC001796.209:5834-6199
  • TTA
  • ACACTATGTTTGGATGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                  GAAA         A TTAGGAATTTTAAAATGACGGAAATAAATGACGGGATTTTATTTTCTAGAATTTGTGAATTTTGTTGTTTGGTTAACCTAAAAGAACAATYGAATTGAAAACGGAATTTGTTAATTTTAAACTCTCAATCATAGAAATTGGGAAATGACA
  ACACTATGTTTGGATGAA    TTTAAGATT C                                                                                                                                                      
  ||||||||||||||||||    ||||||||| |                                                                                                                                                      C
  TGTGATACAAACCTACTT    CCTTTATTT G                                                                                                                                                      
AT                  ----         - AACCTTAAACCTATTTTCAATCTTAAATATTTAACTGTACGTGGTTAAGGGAACAAACCTAAATATTGTATCTTTAAATCTTAAAAGTGCACCTTTTTTTTGAACCTTAAACCCCGGAGGTTAAAGGTTCAAATTTAAGGTACATTTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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