SE3020388

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_525
  • Malus domestica
  • SE3020388
  • Mutator
  • MadM81
  • MDC005155.296:2863-3028
  • ATATAGAAG
  • GAGAAAAACTTACATGGAACAAGTTCACCGCCACATGACGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATAGAAG    AA      C  G   CAA        CC     AC   CTAT   C       CA      AA  CA  TT
         GAGA  AACTTA AT GAA   GTTCACCG  ACATG  GTC    GTC AATAATA  TTGCCA  TG  AG  
         ||||  |||||| || |||   ||||||||  |||||  |||    ||| |||||||  ||||||  ||  ||  T
         CTCT  TTGAAT TA CTT   CAAGTGGC  TGTAC  CAG    TAG TTATTAT  AACGGT  AC  TC  
 AAGATATA    CG      A  A   ACC        AA     CA   -AAT   A       AG      AC  -C  TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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