SE3020389

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_526
  • Malus domestica
  • SE3020389
  • Mutator
  • MadM7
  • MDC002089.303:3962-4178
  • AATTATGAA
  • TTATGAAGGAACCGGATCCCCTRCGAATCCTTTAAAACTGAGCTCACTAATCAATGAATCCGGACCGTTGAAATTTGAT

Secondary structure and sequence

TSD    TIR
5'



3'
AA      -A     C         R  A    T                    C                           CCAAATG      --------------AC   YA
  TTATGA  GGAAC GGATCCCCT CG ATCC TTAAAACTGAGCTCACTAAT AATGAATCCGGACCGTTGAAATTTGAT       TTACAA                AGG  
  ||||||  ||||| ||||||||| || |||| |||||||||||||||||||| |||||||||||||||||||||||||||       ||||||                |||  G
  AGTATT  CCTTG CCTAGGGGA GC TAGG AGTTTTGACTCGGGTGATTA TTACTTAGGCCTGGCAATTTTAAACTA       GATGTT                TCC  
 A      AA     A         G  C    T                    A                           ATTTAKT      AATAATATTGAAAATC   CC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End