SE3020392

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_529
  • Malus domestica
  • SE3020392
  • Mutator
  • MadM11
  • MDC016465.497:6524-6687
  • TTCATTATG
  • GGGATGTGCTATCCACACACCCCATTTTACTTCTCACGCACCCTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCATTAT   A    C            CCA                -       TTAA    T  T     -   TTCTTCA
        GGG TGTG TATCCACACACC   TTTTACTTCTCACGCA CCCTTTG    TTTC GT CGTTG ATC       
        ||| |||| ||||||||||||   |||||||||||||||| |||||||    |||| || ||||| |||       A
        CCC ACAC ATAGGTGTGTGG   AAAATGAAGAGTGTGT GGGAGAT    AAAG CG GCAGC TAG       
TATTACTT   C    T            TAA                A       --TA    C  -     C   TCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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