Plant MITE

SE3020394

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_531
Malus domestica
SE3020394
Mutator
MadM11
MDC001434.402:2796-2959
AAACTAAAG
GGGGTGTGTTATCCACACACTYCATTTTACTTCTTACACACCC

Secondary structure and sequence

TSD TIR

5'

3'

AAACTAAA        T   C      -  YC         C     C    CTTG       ATA       -   TTCTTCA
        GGGGTGTG TAT CACACA CT  ATTTTACTT TTACA ACCC    TTAATTT   TCCGTTG ATT       
        |||||||| ||| |||||| ||  ||||||||| ||||| ||||    |||||||   ||||||| |||       A
        CCCCACAC ATA GTGTGT GG  TAAAATGAA AGTGT TGGG    GATTAAA   AGGCAAC TAA       
AAATCAAA        T   A      A  -A         A     A    --AA       AGA       C   TYTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020394

AAACTAAAGGGGTGTGTTATCCACACACTYCATTTTACTTCTTACACACCCCTTGTTAATTTATATCCGTTGATTTTCTTCAATTCATYTAATCCAACGGAAGAAAATTAGAAGGGTATGTGAAAAGTAAAATAGGATGTGTGAATATCACACCCCAAACTAAA

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