SE3020395

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_532
  • Malus domestica
  • SE3020395
  • Mutator
  • MadM5
  • MDC007208.331:2384-2571
  • CTGAACCAG
  • CTGAACCAGGAGAGATTTTTCAGTGTGACCGGTACACAAGCTGATACACTATGTGT

Secondary structure and sequence

TSD    TIR
5'



3'
   AAC                G      C  TAC     C  A  C         CATT   CAAATT      T  GTGTGCTAAAAT   A
CTG   CAGGAGAGATTTTTCA TGTGAC GG   ACAAG TG TA ACTATGTGT    ATA      GTGGGA AT            GTT 
|||   |||||||||||||||| |||||| ||   ||||| || || |||||||||    |||      |||||| ||            ||| A
GAC   GTCCTCTTTAAAAAGT ACACTG CC   TGTTC AC AT TGGTACACA    TAT      TACCCT TA            CAA 
   CAA                A      T  TTA     -  C  A         AAAT   CTTCAC      T  AAATAAAAAATT   T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End