Plant MITE

SE3050396

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_533
Malus domestica
SE3050396
PIF/harbinger
MadP7
MDC016282.140:6035-6273
TAA
AGAGCTCGTTTGGATGTGCTTTTAAAATAACTAAAAGCGTTTTTGATGAAAATGTTTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

TA  A                         A   A     G      AT              -A  -  CTCCTTGGTAAAAATGCAAGAAAATCATGGAAAAACACTTAAAGTACTTC
  AG GCTCGTTTGGATGTGCTTTTAAAAT ACT AAAGC TTTTTG  GAAAATGTTTTTGG  AC CA                                                  
  || ||||||||||||||||||||||||| ||| ||||| ||||||  ||||||||||||||  || ||                                                  C
  TC CGAGCAAACCTATACGAAAATTTTA TGA TTTCG GAAAAT  CTTTTATAAAAACC  AT TT                                                  
AA  C                         C   C     G      CT              CA  G  TTCGTGAAATTCACGAAAGACGTTCTTCGTAATCAATACACGAAGAAGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050396

TAAGAGCTCGTTTGGATGTGCTTTTAAAATAACTAAAAGCGTTTTTGATGAAAATGTTTTTGGAACCACTCCTTGGTAAAAATGCAAGAAAATCATGGAAAAACACTTAAAGTACTTCCTGGAAGAAGCACATAACTAATGCTTCTTGCAGAAAGCACTTAAAGTGCTTTTGTAACCCAAAAATATTTTCTCTAAAAGGGCTTTCAGTCATTTTAAAAGCATATCCAAACGAGCCCTAA

Copy Cancel