SE3060401

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_538
  • Malus domestica
  • SE3060401
  • Mim
  • MadMi1
  • MDC022479.302:12976-13213
  • ATATATA
  • ATATATATATAGGCCCTTTAATAAGAGGGATCCTTATTTTTCTAAAAAAATTGGAACACCCTCTCGACCGTTCGATTGATTTTAATGAAATTGTGTGGTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
           A  C C               C         -         T   -A   CC  CTC   C   C    -                         GATTAAATTACA
 ATATATATAT GG C TTTAATAAGAGGGAT CTTATTTTT CTAAAAAAA TGG  ACA  CT   GAC GTT GATT GATTTTAATGAAATTGTGTGGTTGA            
 |||||||||| || | ||||||||||||||| ||||||||| ||||||||| |||  |||  ||   ||| ||| |||| |||||||||||||||||||||||||             
 TATATATATA TT G AAATTGTTCTCCCTA GAGTAAAAA GATTTTTTT ACC  TGT  GA   CTG TAA CTAA CTGAAATTATTTTAACACACTAACT            
A          C  A A               A         A         T   CC   AA  AAA   T   C    A                         ATAACACACCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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