Plant MITE

SE3020404

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_541
Malus domestica
SE3020404
Mutator
MadM5
MDC009314.758:38906-39093
CAACCGTGC
ACCGTGCGAGATATTTTTCAGTGTGATCGG

Secondary structure and sequence

TSD TIR

5'

3'

CA  C  GC    T        G     T   TACACGAAA          C     -----------------------------AT     AAATTGTAGGATTTGT
  AC GT  GAGA ATTTTTCA TGTGA CGG         TGGTACATCA GTGTT                               TATAC                
  || ||  |||| |||||||| ||||| |||         |||||||||| |||||                               |||||                 
  TG CA  CTCT TAAAAAGT ACACT GCC         ACCATGTGGT CACAA                               TTCAA                
CG  C  AC    T        A     -   CTTATACCC          A     AAATACATTCACCATCATTTAAAATAAAAAA     TAATTGAAAAATTGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020404

CAACCGTGCGAGATATTTTTCAGTGTGATCGGTACACGAAATGGTACATCACGTGTTATTATACAAATTGTAGGATTTGTGTGTTAAAAAGTTAATAACTTAAAAAATAAAATTTACTACCACTTACATAAAAACACATGGTGTACCACCCATATTCCCGTCACAATGAAAAATTTCTCCAACCGTGC

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