SE3050405

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_542
  • Malus domestica
  • SE3050405
  • PIF/harbinger
  • MadP4
  • MDC015242.272:5027-5445
  • TTA
  • AGGGGGGTGTATTCAATTGGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                      TTTTA            TCTTTTAA      ------ AGGGGTATTCAATCAGGATTTCAAGTGATTCTCTGAAATTTTAGGTGTATTCAATTAGAATTTTAAGATAGTTTATTAAAATMCTTAGAAATCTGGGTGTATTCAATTAGAATTTTAAAGAAGTTTATAACATTCCAGGTGTATTCAATTAGAA
  AGGGGGGTGTATTCAATTGGGA     AGGGATTTTAAT        TGAATC      T                                                                                                                                                          
  ||||||||||||||||||||||     ||||||||||||        ||||||      |                                                                                                                                                          A
  TCCCCCCACATAAGTTAACTCT     TCTCTAAAATTA        CCTAAA      T                                                                                                                                                          
AT                      TACAC            --------      AATAYC CAAATTAACTAAACATCTATAAGGTATATTTTAAAACTAAGTTAAGGGAACTTTAGAGTAYCCTTCTCCACTCTAAACATCTACGAATTTTATGTGATGMTTTAGAGAGATTAAGAGAGATTAAGGAGTTGAAAGAGTTTAAGAAATTTTAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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