SE3020406

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_543
  • Malus domestica
  • SE3020406
  • Mutator
  • MadM11
  • MDC002754.330:5460-5623
  • TATATATAG
  • TATATATAGGGGTGTGATATCCACACACCCTATTTTACTTCTCACACACCTTTTTAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                A                                     --      TCGG    CG    GGATGAA
TATATATAGGGGTGTG TATCCACACACCCTATTTTACTTCTCACACACCTTTT  TAATTT    CCGT  GATC       
|||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||    ||||  ||||       T
ATATATATCCCCACAC ATAGGTGTGTGGGGTAAAATGAAGAGTGTGTGGGGAA  ATTAAG    GGCA  CTAG       
                G                                     CT      TACA    -A    AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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