SE3020407

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_544
  • Malus domestica
  • SE3020407
  • Mutator
  • MadM41
  • MDC022484.73:17472-17677
  • CCCTTTGTT
  • GGATTTGGATCCTCTCCTGAGCTAATGGAGAGMATCCTCCTGACCCATCATCGTGGGCAAATCCAACGGCTATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CCCTTTGTT          CC       A C          M          C        G     ----------AA         C     TTATTATAA   TG
         GGATTTGGAT  TCTCCTG G TAATGGAGAG ATCCTCCTGA CCATCATC TGGGC            ATCCAACGG TATAA         CTT  
         ||||||||||  ||||||| | |||||||||| |||||||||| |||||||| |||||            ||||||||| |||||         |||   
         CCTAAACCTA  AGAGGAC C ATTACCTCTC TAGGAGGATT GGTAGTAG ACCCG            TAGGTTGCC ATATT         GAG  
TTGTTTCCC          MA       C A          C          A        A     ACAACCTAAAAA         A     TGTCTTTCA   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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