Plant MITE

SE3020408

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_545
Malus domestica
SE3020408
Mutator
MadM10
MDC021563.301:8964-9204
CTATTTAAA
GGACCTGAATTGTCTGCCCTCCCCATCCCATACCCTTCTCATCTCCTCCTATTTATATGGTCACGGTTAAGCCACATCAACATTTTATATTGATTTTTTTTAT

Secondary structure and sequence

TSD TIR

5'

3'

CTATTTAAA                        -                   -           ATA                  A               GA    --------      AGA
         GGACCTGAATTGTCTGCCCTCCCC ATCCCATACCCTTCTCATC TCCTCCTATTT   TGGTCACGGTTAAGCCAC TCAACATTTTATATT  TTTT        TTTTAT   
         |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||   |||||||||||||||||| |||||||||||||||  ||||        ||||||   A
         CCTGGACTTAACAGACGGGAGGGG TAGGGTATGGGAAGGGTAG AGGAGGATAAA   ACCAGTGCCAATTCGGTG AGTTGTAAAATATAA  GGAA        AGAATA   
AAATTTATC                        G                   T           GAC                  C               GA    CAAAAAAC      ATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020408

CTATTTAAAGGACCTGAATTGTCTGCCCTCCCCATCCCATACCCTTCTCATCTCCTCCTATTTATATGGTCACGGTTAAGCCACATCAACATTTTATATTGATTTTTTTTATAGAAATAATAAGACAAAAAACAAGGAGAATATAAAATGTTGACGTGGCTTAACCGTGACCACAGAAATAGGAGGATGATGGGAAGGGTATGGGATGGGGGAGGGCAGACAATTCAGGTCCCTATTTAAA

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