SE3050410

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_547
  • Malus domestica
  • SE3050410
  • PIF/harbinger
  • MadP15
  • MDC015839.447:2916-3417
  • CTA
  • GGCGTGTTTACGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTAAG              TCCGTAAT   -            -   TTAAATTC   TTAC     ------------ATTCC     TTACTAAACATGGAGGAATCAAAAAAGCAGTGGACCCACACAAATTTTGGAATTCAATTCCTTGTGTTGGTGGAATTGGATTCCCTAGATATAGGTGGTAATCCAATTCCTTATTGTTTGGGTAATCGGAATGATACTTTTGTTTCCTTTATGCCCTCACTTACTTTTTCTAT
     GGCGTGTTTACGTA        CGG AATGAGAATGTG GAA        TGA    GGAGT                 GGTGT                                                                                                                                                                             
     ||||||||||||||        ||| |||||||||||| |||        |||    |||||                 |||||                                                                                                                                                                             T
     CCGCGCAAATGCAT        GCC TTACTTTTATAC CTT        ACT    CCTCA                 TCTTA                                                                                                                                                                             
AAATA              -------T   A            T   -TAACTTA   -CCT     ACCTTACTCCTCTTCAG     GCCTAAGAACAATTTCAACAAATGAATTTACAAGACCTTAGCTTTATCTTAAAGTATTTCGACAAATGATTAAGTCGTCTTAGCCTTATATTTGTACATACTAATGATTTTACGGGAACAGGGTTTAGTTTATAAAATATATGAAATTACCCAAATATTTCCTATCAGAACCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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