Plant MITE

SE3020411

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_548
Malus domestica
SE3020411
Mutator
MadM20
MDC013304.239:6694-6910
GTCGTAGCC
GTAGCCGGATTTGGATCATTTCCTGAGCTAATGGAGAGGATCCTTCTGACCAAGTGTTATGGGCCGTTGGATTTTCATCCAACGGCTATAA

Secondary structure and sequence

TSD TIR

5'

3'

GTC  A  --            A                                                         C               TTATATTAACTTTAAA   AC
   GT GC  CGGATTTGGATC TTTCCTGAGCTAATGGAGAGGATCCTTCTGACCAAGTGTTATGGGCCGTTGGATTTT ATCCAACGGCTATAA                AGG  
   || ||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||                |||  C
   CG TG  GCCTAAACCTAG AGAGGACTCGATTACCTCTCCTAGGAGGACTGGTTCACAATACCTGGCAACCTAAAA TAGGTTGCCGATGTT                TCC  
  C  A  CT            G                                                         A               --------------TG   AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020411

GTCGTAGCCGGATTTGGATCATTTCCTGAGCTAATGGAGAGGATCCTTCTGACCAAGTGTTATGGGCCGTTGGATTTTCATCCAACGGCTATAATTATATTAACTTTAAAAGGACCCACCTGTTTGTAGCCGTTGGATAAAAATCCAACGGTCCATAACACTTGGTCAGGAGGATCCTCTCCATTAGCTCAGGAGAGGATCCAAATCCGTCGTAGCC

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