SE3020412

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_549
  • Malus domestica
  • SE3020412
  • Mutator
  • MadM11
  • MDC027213.50:3026-3193
  • ATTATTATT
  • TATTATTAGGGGTGTGATATCCACACACCTCATTTTACTTCTCACACACCTTTTTAATTT

Secondary structure and sequence

TSD    TIR
5'



3'
AT  T  T          A                                     --TA    TCGG    CG    GGATGAA
  TA TA TAGGGGTGTG TATCCACACACCTCATTTTACTTCTCACACACCTTTT    ATTT    CCGT  GATC       
  || || |||||||||| |||||||||||||||||||||||||||||||||||||    ||||    ||||  ||||       T
  AT AT ATCCCTACAC ATAGGTGTGTGGGGTAAAATGAAGAGTGTGTGGGGAA    TAAA    GGCA  CTAG       
TT  T  T          G                                     CTAC    TACA    -A    AAGAAGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End