Plant MITE

SE3020413

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_550
Malus domestica
SE3020413
Mutator
MadM19
MDC025075.15:17489-17706
GGAAATCGA
ATCGATGGACCAGGATCCTCTCCTGAGCTAAGGATGAGGATCCTCCTCATCAAGAGATGTAGGCCGTTGGATGAAAATCCAACGGCTACAA

Secondary structure and sequence

TSD TIR

5'

3'

GGAA      ----                                               -G  A   A                              TTATTATAACTTTAA    A
    ATCGAT    GGACCAGGATCCTCTCCTGAGCTAAGGATGAGGATCCTCCTCATCAA  AG TGT GGCCGTTGGATGAAAATCCAACGGCTACAA               AGGG 
    ||||||    |||||||||||||||||||||||||||||||||||||||||||||||  || ||| ||||||||||||||||||||||||||||||               |||| C
    TAGCTA    CCTGGTCCTAGGAGAGGACTCGATTCCTACTTCTAGGAGGAGTAGTT  TC ACA CCGGCAACCTACTTTTAGGTTGCCGATGTT               TCCC 
          AAGG                                               AG  -   C                              -------------TG    C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020413

GGAAATCGATGGACCAGGATCCTCTCCTGAGCTAAGGATGAGGATCCTCCTCATCAAGAGATGTAGGCCGTTGGATGAAAATCCAACGGCTACAATTATTATAACTTTAAAGGGACCCCCTGTTTGTAGCCGTTGGATTTTCATCCAACGGCCCACACTGATTGATGAGGAGGATCTTCATCCTTAGCTCAGGAGAGGATCCTGGTCCGGAAATCGAT

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