SE3020420

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_557
  • Malus domestica
  • SE3020420
  • Mutator
  • MadM34
  • MDC012597.976:592-807
  • TTATTATAG
  • TATTATAGGGAAAGAGATCATCTTCGAATTTCTTCCTCCAAAGTCTGTGTATCAAGTGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
T   T               A      A                      T          CTGTACC            T      ACC    AAATCCAAGCCCCTG
 TAT ATAGGGAAAGAGATC TCTTCG ATTTCTTCCTCCAAAGTCTGTG ATCAAGTGAT       CTTGAAATTTGA CCAACG   CTTG               
 ||| ||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||       |||||||||||| ||||||   ||||               A
 ATA TATTCCTTTCTCTAG AGAGGC TAGAGAAGGAGGTTTCGGGTAC TGGTTCATTA       GAACTTTAAATT GGTTGT   ATTT               
G   T               G      C                      C          AGTTCAA            -      --C    TTTAATAATATGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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