SE3020423

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_560
  • Malus domestica
  • SE3020423
  • Mutator
  • MadM20
  • MDC020034.220:9466-9682
  • GTTTTTTTA
  • GGAATTGGATCTTCTCCGAGGCAAAGCCTCCGGATCCTCCTGACCCACTAACATGGGTCGTTGGATTTTGATCCAACGGCTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTTTTTTA                         G    C     C          C          C         T    C  C        TTATTATAAATTTTAA    GT
         GGAATTGGATCTTCTCCGAGGCAAA CCTC GGATC TCCTGACCCA TAACATGGGT GTTGGATTT GATC AA GGCTACAA                AGGG  
         ||||||||||||||||||||||||| |||| ||||| |||||||||| |||||||||| ||||||||| |||| || ||||||||                ||||   
         CCTTAACCTAGGAGAGGCTCCGTTT GGAG CCTAG AGGACTGGGT ATTGTACCCG CAACCTAAA CTAG TT CCGATGTT                TCCC  
ATTTTTTTG                         A    A     A          T          A         -    A  Y        --------------TG    CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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