SE3020425

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_562
  • Malus domestica
  • SE3020425
  • Mutator
  • MadM15
  • MDC011509.322:8757-8972
  • GATATTTTG
  • GATATTTTGGGAAAGGAATCATCTCTGGATCCATTCCTCCTAATCCACCAAATCAGAGAATCGGTGTCATTGAAATTTGATCAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
         TTG      GA     C         A               C             G            T      A   ----------------    ACAAACAGGG
   GATATT   GGAAAG  ATCAT TCTGGATCC TTCCTCCTAATCCAC AAATCAGAGAATC GTGTCATTGAAA TTGATC AAC                GGCT          
   ||||||   ||||||  ||||| ||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||| |||                ||||           
   TTATAG   CTTTTC  TAGTA AGGCCTAGG AAGGAGGATTAGGTG TTTAGTCTCTTAG CATAGTAACTTT AATTAG TTG                TGAA          
GTT      ---      AT     A         G               A             G            T      G   GCAACTTTAATAATAT    AATTTCACCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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