SE3020428

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_565
  • Malus domestica
  • SE3020428
  • Mutator
  • MadM10
  • MDC018373.371:23503-23706
  • TTCCGAGAA
  • TCCGAGAAGGAGTAGAATTCTCTCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
T  -     A   G   --AA    C   -  YTYTT       CCC   CC     C  C      -A     -A  GTCACGGTTAAGCCACATCAACATCATATAT
 TC CGAGA GGA TAG    TTCT TCC CC     TTTTTCC   TCC  CTTCC TC CCTCCT  TTTGA  CG                               
 || ||||| ||| |||    |||| ||| ||     |||||||   |||  ||||| || ||||||  |||||  ||                               T
 AG GCTTT CCT ATC    AAGA AGG GG     AGAAAGG   AGG  GAAGG AG GGAGGA  GTGTA  AG                               
A  A     -   G   CTAA    C   A  -----       --T   -T     T  A      AA     AG  AATAAAATAGAAAGAGAACGATATTTTTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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