SE3020429

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_566
  • Malus domestica
  • SE3020429
  • Mutator
  • MadM83
  • MDC008361.626:9890-10454
  • TTCATTGAA
  • TCATTGAAGGGT

Secondary structure and sequence

TSD    TIR
5'



3'
T   T        AAACAA  A                A     C               C   A  C         AGAAAAATT            --A  A    C   C    A        A                 CTA                            ATTACTTGCATG        ATA    G    -    GTA      -----CATAAA   A  GTGTATAGAGTTAACTTTGGAGGATAAATTGATAGTTTTTCATACAGAAATATTG
 TCA TGAAGGGT      CC ATTTAGTCCCTGAATT TCACC TAGTGAAAATTGGGT CCT AA TATTTTTTC         AGTCCCTGAATT   TA AAAT TGC AATT CATCCCTA TGTTATATTTGAAGCTA   TATTCAATTTTTCGTCAATTTAAGTCAC            TGATACAC   GGAG GTAG ATTG   GTTTTT           GAA TA                                                       
 ||| ||||||||      || |||||||||||||||| ||||| ||||||||||||||| ||| || |||||||||         ||||||||||||   || |||| ||| |||| |||||||| |||||||||||||||||   ||||||||||||||||||||||||||||            ||||||||   |||| |||| ||||   ||||||           ||| ||                                                        
 AGT ACTTCCCA      GG TAAATTAGGGACTTGA AGTGG GTTACTTTTAATCCA GGA TT ATAAAAAAG         TCAGGGATTTAA   AT TTTA ACG TTAA GTAGGGAT ATAATATAAGTTTCGAT   ATAGGTTAAAAAGCAGTTGAATTCAGTG            ACTGTGTG   TCTC CATT TGGT   TAAAAG           GGG AT                                                       
A   T        CTTCAC  C                A     A               A   C  A         CCATTCTAT            GTA  A    -   A    A        G                 AAA                            -----------A        AAA    A    A    -AG      AACAGATATTC   A  TGTAAAGTATATCCAACGCTTAAATTACAGATTAAATGGGAGTTTTCAATTGAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End