SE3020436

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_573
  • Malus domestica
  • SE3020436
  • Mutator
  • MadM27
  • MDC033515.10:1581-1797
  • CTTTGGAGA
  • CTTTGGAGAGGAATTGGATCCTCTCCTGAGCACAAGCTCAGAATCCTCCTGATCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
         A                                A    TCC       CCCACA          A                  C  TTATTATAACTTTT
 CTTTGGAG GGAATTGGATCCTCTCCTGAGCACAAGCTCAG ATCC   TGATCAG      TGAACTGTTG ATTTTGATTAAACGGTTA AA              
 |||||||| |||||||||||||||||||||||||||||||| ||||   |||||||      |||||||||| |||||||||||||||||| ||              A
 GAGGTTTC CCTTAACCTAGGAGAGGACTCGTGTTCGAGTT TAGG   ACTAGTC      ACTTGGCAAT TAAAACTAGTTTGCCAAT TT              
A        -                                C    WCA       AAATTC          C                  T  TATCTCCTAAGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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