Plant MITE

SE3050440

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_577
Malus domestica
SE3050440
PIF/harbinger
MadP16
MDC009089.228:13912-14190
TAA
AGGGTATGTTTGGGTTGAGGGACTTCCAAATTCCACGGCATTTAGACAAAATGAAGAAGAAATG

Secondary structure and sequence

TSD TIR

5'

3'

TA               T          C        C         A                -  AACC     A       ------     G  G   ATAC   A     AC       A  -    TACTAGTCATAT
  AGGGTATGTTTGGGT GAGGGACTTC AAATTCCA GGCATTTAG CAAAATGAAGAAGAAA TG    ACAAA AGTTAGA      AGGAA TA AAA    ACC CATGA  ATTACAA GT TGTG            
  ||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||||||| ||    ||||| |||||||      ||||| || |||    ||| |||||  ||||||| || ||||             
  TCCCATACAAACCCA CTCCTTGAAG TTTAAGGT CCGTAAATC GTTTTACTTCTTCTTT GC    TGTTT TTAATCT      TCCTT AT TTT    TGG GTACT  TAATGTT CA ACAC            
AA               -          T        T         C                T  CTAT     C       GTCACC     A  G   CACA   A     CA       C  T    TCTCCCTAAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050440

TAAGGGTATGTTTGGGTTGAGGGACTTCCAAATTCCACGGCATTTAGACAAAATGAAGAAGAAATGAACCACAAAAAGTTAGAAGGAAGTAGAAAATACACCACATGAACATTACAAAGTTGTGTACTAGTCATATGAAAATCCCTCTCACATACCTTGTAATACTCATGAGGTACACTTTGTAATTCCTCCACTGTCTAATTCTTTGTTATCCGTTTTCTTCTTCATTTTGCCTAAATGCCTTGGAATTTTGAAGTTCCTCACCCAAACATACCCTAA

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