Plant MITE

SE3020444

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_581
Malus domestica
SE3020444
Mutator
MadM30
MDC013848.313:20470-20633
TAAAACTGG
TGGGGTGGTGCTATCCACACACCCATTTTTACCTCTCACACACCC

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAC              C       C             CAC      CTCTC     C   -    CG    YAAAGKA
      TGGGGTGGTGCTAT CACACAC CATTTTTACCTCT   ACACCC     AATTT TTG CCGT  GATC       
      |||||||||||||| ||||||| |||||||||||||   ||||||     ||||| ||| ||||  ||||       T
      ATCCCATCACGATA GTGTGTG GTAAAAATGGAGG   TGTGGG     TTAAA AAC GGTA  CTAG       
TTCAAA              A       Y             ATA      AACAA     -   A    -A    AAGAAGM

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020444

TAAAACTGGGGTGGTGCTATCCACACACCCATTTTTACCTCTCACACACCCCTCTCAATTTCTTGCCGTCGGATCYAAAGKATMGAAGAAGATCAATGGACAAAAATTAACAAGGGTGTATAGGAGGTAAAAATGYGTGTGTGAATAGCACTACCCTAAAACTT

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