SE3020445

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_582
  • Malus domestica
  • SE3020445
  • Mutator
  • MadM8
  • MDC005282.445:2347-2537
  • TTTGCATGA
  • TGCATGAAGAGTAATGCTAGATAGATCAAATTTTTTAAACTAAATTTGCAAATTAAATGATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
  TT    TG    G     C    T        TT           A                      TGTACATGATTGGATTATTAATTAAGTG
    TGCA  AAGA TAATG TAGA AGATCAAA  TTTTAAACTAA TTTGCAAATTAAATGATGTGGT                            
    ||||  |||| ||||| |||| ||||||||  ||||||||||| ||||||||||||||||||||||                             
    ACGT  TTCT ATTAC ATCT TCTAGTTT  AAAATTTGATT AAACGTTTGGTTTACTACACAG                            
AAGT    --    Y     A    C        TT           -                      TGGTTATTCTTTGTTCGTGCAATTAGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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