SE3020446

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_583
  • Malus domestica
  • SE3020446
  • Mutator
  • MadM54
  • MDC004648.123:4059-4275
  • GCTGCAGCT
  • GCTGCAGCTGGAAATGGATGYYCTTCRGATCCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
         TG         GYY    R        CCTC      C  C        AA   CG                 YC  C   ---Y   GTTATTATAACTTT
 GCTGCAGC  GAAATGGAT   CTTC GATCCCTT    TTAATT AC AAATTAGG  ATT  TGTCATTGAAATTTGAT  AA GGC    AAA              
 ||||||||  |||||||||   |||| ||||||||    |||||| || ||||||||  |||  |||||||||||||||||  || |||    |||               
 CGACGTCG  CTTTACTTA   GAAG CTAGGGAA    GATTAG TG TTTAGTCT  TAG  ATGGTAACTTTAAACTA  TT CCG    TTG              
T        -Y         GTA    C        ATAA      A  T        CC   AY                 GA  A   ATGT   TACCCAGKTGAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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