SE3020449

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_586
  • Malus domestica
  • SE3020449
  • Mutator
  • MadM88
  • MDC011299.396:2105-2280
  • TTTTGAAGT
  • TTTTGAAGTGGATAAAGCTAGGAAGAG

Secondary structure and sequence

TSD    TIR
5'



3'
     T    T  A   A      AA   CAAAATTTTAA     A   -G          T     TRA  CYTAAGAAACA   ACY        C
  TTT GAAG GG TAA GCTAGG  GAG           ACCAA TTT  TAAACCAAAT ATGTG   CT           AGT   TTAATTGA 
  ||| |||| || ||| ||||||  |||           ||||| |||  |||||||||| |||||   ||           |||   |||||||| A
  AAG TTTC CC ATT CGATCC  CTC           TGGTT AAA  ATTTGGTTTA TACAC   GA           TCA   AATTGATT 
TT   T    -  -   A      --   -----------     A   AA          C     --C  CATCTACTAAC   -AR        C

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End