Plant MITE

SE3020450

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_587
Malus domestica
SE3020450
Mutator
MadM43
MDC001269.501:7640-7852
ATTGYACTT
TGYACTTGGATTCTCTMCCCTCCCAATTCGGTGRCCT

Secondary structure and sequence

TSD TIR

5'

3'

AT  Y             M        A       R   CCTRGTGCCW       -   G  GT  C G    G   C  C             ACTWW      TTTCTTAT
  TG ACTTGGATTCTCT CCCTCCCA TTCGGTG CCT          TCCTGTT TGT TG  CA G TTAA CCA GT AATATTTTATATT     TTTTTT        
  || ||||||||||||| |||||||| ||||||| |||          ||||||| ||| ||  || | |||| ||| || |||||||||||||     ||||||        T
  AC TGAACCTAAGAGA GGGAGGGT AAGCCAC GGG          AGGACAA ACA AC  GT C AATT GGT CG TTGTAAAATATAA     AAAAAA        
TT  R             C        A       -   ----------       Y   K  RW  Y K    A   A  A             ----C      TATTTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020450

ATTGYACTTGGATTCTCTMCCCTCCCAATTCGGTGRCCTCCTRGTGCCWTCCTGTTTGTGTGGTCACGGTTAAGCCACGTCAATATTTTATATTACTWWTTTTTTTTTCTTATTATTTTTATAAAAAACAATATAAAATGTTAGCATGGATTAAKCYTGWRCAKACAYAACAGGAGGGCACCGAAATGGGAGGGCAGAGAATCCAAGTRCATT

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