Plant MITE

SE3020451

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_588
Malus domestica
SE3020451
Mutator
MadM29
MDC007898.303:399-1053
TAAAATAGG
GGCTTATTATATTAACACCTCACAAATTGTTGAAT

Secondary structure and sequence

TSD TIR

5'

3'

TAAAATA     A        A    T      T        AAACTTCACTTACTTAATACATCCCATATTTACTTTTTCA     AAATTATCTTAATACACCTCACTTCCTTCCTCATAATACCCTCACACCCCATATTCTTAATATACATTTTACATTTTCTACACACACCCCACATTTTTTTATACATCCCACATTTCTCAAATCTTATAACACTCATTTTTAATTTTGCCGAATGATTTCAAACTATATGAACTTTAGTTTGCCGAATGATTTCAAATTGAATGATTTAAAAAAAATGTTTAGACTCATTTGAACATTTTTCAATAACAACAATAATGAT
       GGCTT TTATATTA CACC CACAAA TGTTGAAT                                        ATTAA                                                                                                                                                                                                                                                                   
       ||||| |||||||| |||| |||||| ||||||||                                        |||||                                                                                                                                                                                                                                                                    
       CCGAA AATATAAT GTGG GTGTTT ACAACTTA                                        GGGTG                                                                                                                                                                                                                                                                   
TAAAATA     A        C    T      T        -------------------------------------CAT     TAATTTTAAATTATAATTACTAAATAAATGAGATGATACATTATTATTAAAACTGGAATAATCCAAATTTTTTATTATTTTTAAAATATTTATGTGATGTTTAGAGAAAATTGCATAATGAATAAATAAAGTTGATAGTTTTAGGGAGAGTAAGAGGTAACAACTTATTTTGGGATTCGTTACTTTGATATTTGTACAACTAACTCTTTTTAATAAAAACTGCTTACCTTGTGCTTTAGCCACAAAGCTTTCGAAACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020451

TAAAATAGGCTTATTATATTAACACCTCACAAATTGTTGAATAAACTTCACTTACTTAATACATCCCATATTTACTTTTTCAATTAAAAATTATCTTAATACACCTCACTTCCTTCCTCATAATACCCTCACACCCCATATTCTTAATATACATTTTACATTTTCTACACACACCCCACATTTTTTTATACATCCCACATTTCTCAAATCTTATAACACTCATTTTTAATTTTGCCGAATGATTTCAAACTATATGAACTTTAGTTTGCCGAATGATTTCAAATTGAATGATTTAAAAAAAATGTTTAGACTCATTTGAACATTTTTCAATAACAACAATAATGATTTCAAAGCTTTCGAAACACCGATTTCGTGTTCCATTCGTCAAAAATAATTTTTCTCAATCAACATGTTTATAGTTTCATTGCTTAGGGTTTTATTCAACAATGGAGAATGAGAGGGATTTTGATAGTTGAAATAAATAAGTAATACGTTAAAAGAGATTTGTAGTGTATTTATAAAATTTTTATTATTTTTTAAACCTAATAAGGTCAAAATTATTATTACATAGTAGAGTAAATAAATCATTAATATTAAATTTTAATGTGGGTACATTCAACATTTTGTGTGGTGCTAATATAAAAAGCCATAAAAT

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