SE3020454

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_591
  • Malus domestica
  • SE3020454
  • Mutator
  • MadM15
  • MDC015483.147:4892-5108
  • ATTTTGGAG
  • TTTGGAGGGAAAGGGATCATCTCTGAATCCCTACCTCCTAATYCTCATGACCCACCAATCCGGACCCTTGAAATTTGATCTAACGGTTAAGGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
AT       -    A      A      A      A         Y            C   C                 A              T  TTATAA    TA
  TTTGGAG GGAA GGGATC TCTCTG ATCCCT CCTCCTAAT CTCATGACCCAC AAT CGGACCCTTGAAATTTG TCTAACGGTTAAGG TA      CTTT  
  ||||||| |||| |||||| |||||| |||||| ||||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||| ||      ||||   
  AGGTTTT CCTT CCCTAG AGAGGT TAGGGA GGAGGATTA GAGTACTGGGTG TTA GCCTGGGAACTTTAAAC AGGTTGCCGATTTT GT      GAGG  
 G       A    C      G      A      A         G            T   A                 A              T  -TCCCC    TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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