SE3050456

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_593
  • Malus domestica
  • SE3050456
  • PIF/harbinger
  • MadP9
  • MDC009777.134:19114-19330
  • TAA
  • AGGGCTGGTTTGGTATTGCTGTGCTTTGAAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  G               CT       GAA     ----------------  T  TTCTGCTGTGCTGTGAGAATAAGCTCATTTTTGCTGCTTCACGTTTTCAATTTTTTTTT
  AG GCTGGTTTGGTATTG  GTGCTTT   AAAAA                AC GC                                                           
  || |||||||||||||||  |||||||   |||||                || ||                                                            
  TC TGACCAAATCATGAC  CACGAAA   TTTTT                CG AC                                                           
AA  A               TC       ATA     CACCCATAGTTTTTTC  -  TTGAGTTTTTCCACAAACCATTTGTGAATTTTTGTCGAATAAAAGTGTCAAAACCCACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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