Plant MITE

SE3020458

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_595
Malus domestica
SE3020458
Mutator
MadM91
MDC019832.200:2056-2217
TATTTTAGG
AGGGAGCTGATTTTCACACKRCTTTTATAYCTTTTCTCACACCCCT

Secondary structure and sequence

TSD TIR

5'

3'

TATTTT      C    TTT     KR        Y     CT      C  -RTT    R AGGCCATCGGATTGAATAAA
      AGGGAG TGAT   CACAC  CTTTTATA CTTTT  CACACC CT    TGTT C                    
      |||||| ||||   |||||  |||||||| |||||  |||||| ||    |||| |                     
      TCCCTT ACTA   GTGTG  GAAAATAT GAAGG  GTGTGG GA    TTAG T                    
TTTTAT      T    TTT     TG        C     AT      Y  RCGA    - ACAGGKAACAAAAGRAAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020458

TATTTTAGGGAGCTGATTTTCACACKRCTTTTATAYCTTTTCTCACACCCCTRTTTGTTRCAGGCCATCGGATTGAATAAATCAAARGAAAACAAKGGACATGATTAGCRAGYGGTGTGTAGGAAGCTATAAAAGGTGTGTGTTTATCATTTCCCTTATTTT

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