Plant MITE

SE3020459

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_596
Malus domestica
SE3020459
Mutator
MadM92
MDC012354.211:5178-5339
TTTTATAGA
AGAGTACTGCTATCCACACG

Secondary structure and sequence

TSD TIR

5'

3'

TTTTAT  A   C      C      TACA       ---C    RCA     YT  GAATTTTAGGTTGTCGGATTGAATAAG
      AG GTA TGCTAT CACACG    TTTTTAC    TCTC   CAACT  TT                           
      || ||| |||||| ||||||    |||||||    ||||   |||||  ||                            
      TC CAT ACGATA GTGTGT    AAAAATG    AGAG   TGCAG  AC                           
TATTTT  C   C      A      RGAG       TAAA    ---     GA  AATAAAAACAGGTAACTGTAAAAAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020459

TTTTATAGAGTACTGCTATCCACACGTACATTTTTACCTCTCRCACAACTYTTTGAATTTTAGGTTGTCGGATTGAATAAGTTGAAAAATGTCAATGGACAAAAATAACAAGGACGTGAGAAAATGTAAAAAGAGRTGTGTGAATAGCACTACCCTTTTTAT

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