SE3020461

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_598
  • Malus domestica
  • SE3020461
  • Mutator
  • MadM24
  • MDC014011.311:2699-2938
  • CTAGAGGTG
  • GGAATGAGGATCCTCTCTGGATCTTCTTTATGAGGATTCAGGGGATTTTGTMATCATGTCCGTTAGTCATAAATCYTACGATRAGTTTTCGT

Secondary structure and sequence

TSD    TIR
5'



3'
CTAGAGGT           C      G      C   A       -   G  GA    G M  C    C    A   A  A   YTA    R  TTT    CA     TATTTGTGTTCAAT
        GGAATGAGGAT CTCTCT GATCTT TTT TGAGGAT TCA GG  TTTT T AT ATGT CGTT GTC TA ATC   CGAT AG   TCGT  GATAT              
        ||||||||||| |||||| |||||| ||| ||||||| ||| ||  |||| | || |||| |||| ||| || |||   |||| ||   ||||  |||||               
        CCTTACTCCTA GAGAGG TTAGAA AAA ACTCTTA AGT CC  AGGA A TA TACA GTAA TAG AT TGG   GCTA TC   AGCA  AAATT              
GTGGGGAT           A      G      A   C       G   A  -A    G T  T    T    G   C  A   CAC    G  TTT    --     TAAAATATGAATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End