SE3020463

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_600
  • Malus domestica
  • SE3020463
  • Mutator
  • MadM7
  • MDC022481.311:3501-3717
  • GGCAAATAC
  • CGGACCAGGATCCTCTCCTGAGCAGATGGAGAGGATCCTCCTGACCAAGCCCATCGGGCCGTTCAATTTTTATCCAACGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
GGCAAATA    C       C                                  A CC              A                 CAAAT   AAGCCCCTCTA
        CGGA CAGGATC TCTCCTGAGCAGATGGAGAGGATCCTCCTGACCA G  CATCGGGCCGTTCA TTTTTATCCAACGGCTA     AGG           
        |||| ||||||| |||||||||||||||||||||||||||||||||| |  |||||||||||||| |||||||||||||||||     |||           A
        GCCT GTCCTAG AGAGGACTCGTCTACCTCTCCTAGGAGGACTGGT C  GTAGCCCGGCAAGT AAAAATAGGTTGCCGAT     TTA           
CATAAACG    A       T                                  C AA              A                 ----A   ATAATATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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