Plant MITE

SE3020465

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_602
Malus domestica
SE3020465
Mutator
MadM9
MDC024942.36:4778-5016
TTAAGTAAT
TTAAGTAATGGAAGAGGATCCTCTCCGGATTCACTTTGTGTGGATCTTAGGGATCCCCACATTCTAGCCGTTCATCGTATATTGTGCAGTCAGTTTTTGTCAGAT

Secondary structure and sequence

TSD TIR

5'

3'

     G   T    GA       C          C     GT               C      C    C         A        A  C  TTT    CA   ACTATTTG      AT
 TTAA TAA GGAA  GGATCCT TCCGGATTCA TTTGT  GGATCTTAGGGATCC CACATT TAGC GTTCATCGT TATTGTGC GT AG   TTGT  GAT        TGTTTA  
 |||| ||| ||||  ||||||| |||||||||| |||||  ||||||||||||||| |||||| |||| ||||||||| |||||||| || ||   ||||  |||        ||||||   
 AATT ATT CCTT  CCTAGGG AGGCCTAGGT AAACA  CCTAGGATCCCTAGG GTGTAG ATCG TAAGTAGCA ATAGCACG CA TC   AATA  CTG        ATAAAT  
T    A   -    AA       T          A     RC               A      A    A         C        C  A  TTT    AA   ---AAAAA      TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020465

TTAAGTAATGGAAGAGGATCCTCTCCGGATTCACTTTGTGTGGATCTTAGGGATCCCCACATTCTAGCCGTTCATCGTATATTGTGCAGTCAGTTTTTGTCAGATACTATTTGTGTTTAATTTTAAATAAAAAAGTCAAATAATTTCTAACCGCACGATACACGATGAATAGCTAAGATGTGAGGATCCCTAGGATCCCRACAAAATGGATCCGGATGGGATCCAATTCCTTAATTAAT

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