SE3020467

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_604
  • Malus domestica
  • SE3020467
  • Mutator
  • MadM11
  • MDC007429.340:5716-5878
  • CTTTTAAGG
  • AAGGGGTGTGATATCCACACACCCCATTTTACTTCTCACACACTTTTTTAATTTTCAGTCATC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTTT   -  -     A           CC     TAC    C           -------------------TAA        -    GGA
     AAG GG GTGTG TATCCACACAC  CATTT   TTCT ACACACTTTTT                      TTTTCAGT CATC   
     ||| || ||||| |||||||||||  |||||   |||| |||||||||||                      |||||||| ||||    
     TTC CC CACAC ATAGGTGTGTG  GTAAA   AAGA TGTGTGGGAAA                      AGAAGTTA GTAG   
 AATT   T  Y     G           SA     MTR    A           CTATTAAATACAGRCAACTAAA        A    GCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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