Plant MITE

SE3020470

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_607
Malus domestica
SE3020470
Mutator
MadM8
MDC010517.121:4156-4344
TTAAAAGAA
AAGGTAATGCTAGGCAGATCAATTTTTTAGACTAAATTTGCAAACCAAATGATGTG

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAAGA     -         C       T                - C      A        TCACCAATAGTAAA    CAC TTAATCAACCCTT
        AAGGT AATGCTAGG AGATCAA TTTTTAGACTAAATTT G AAACCA ATGATGTG              TAAG   G             
        ||||| ||||||||| ||||||| |||||||||||||||| | |||||| ||||||||              ||||   |              
        TTCCA TTACGATCT TCTGGTT AAAAGTTTGATTTAAA C TTTGGT TACTGTAC              TATT   A             
 AAGAAAA     A         C       T                A A      A        -------CAACAAC    --- ACCTAATAATGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020470

TTAAAAGAAAGGTAATGCTAGGCAGATCAATTTTTTAGACTAAATTTGCAAACCAAATGATGTGTCACCAATAGTAAATAAGCACGTTAATCAACCCTTAAGTAATAATCCAATTATCAACAACCATGTCATATGGTTTACAAAATTTAGTTTGAAAATTTGGTCTCTCTAGCATTAACCTTAAAAGAA

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