SE3020471

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_608
  • Malus domestica
  • SE3020471
  • Mutator
  • MadM10
  • MDC010941.181:2294-2520
  • ATACGAAAT
  • ATGGAGGCAGATTATCTGCCCTCCCACTTCCCGTGCCCTTCTGTTTTGTATGGTCATGGTTAAGTCACGTCAACATTTTATATATATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATACGAA             A                 C            ---------     A                                 --A       ATAGAGATAA
       ATGGAGGCAGATT TCTGCCCTCCCACTTCC GTGCCCTTCTGT         TTTGT TGGTCATGGTTAAGTCACGTCAACATTTTATAT   TATTTTT          
       ||||||||||||| ||||||||||||||||| ||||||||||||         ||||| |||||||||||||||||||||||||||||||||   |||||||           
       TACCTCCGTCTAA AGACGGGAGGGTGAAGG CACGGGAGGGCA         AAATA ACCAGTGCCAATTCGGTGCAGTTGTAAAATATA   ATAAAGA          
TAAAGCA             G                 A            CGGGAGAAC     C                                 ATG       AAAACAGAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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