SE3020473

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_610
  • Malus domestica
  • SE3020473
  • Mutator
  • MadM14
  • MDC021367.354:17346-17855
  • TTAAGAAAT
  • GAGTAAATTGTAATAATAGTCYCTCAATTTTAATCAAATTGAAGCAATGGTCCCTCAACTAAAAATYCATTACCATTGGTCCCAACTCTTCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TTAAGAAAT            A    A   Y  -C         CA     A             C          Y                --     T       --------A     -------------------- T    ----    TTTCGTCAACTTCGTCAAAATTTTGTCAAAATAAGTTATGTTGGAAKGACCATTACTACAATTGGGGTYCCTCAACTCATCAAAACATGTAGCTATGGTCATTTTCGTCAACTTCRT
         GAGTAAATTGTA TAAT GTC CT  AATTTTAAT  AATTG AGCAATGGTCCCT AACTAAAAAT CATTACCATTGGTCCC  AACTC TCAAAAT         TGTAG                    C ATGG    TTCT                                                                                                                     
         |||||||||||| |||| ||| ||  |||||||||  ||||| ||||||||||||| |||||||||| ||||||||||||||||  ||||| |||||||         |||||                    | ||||    ||||                                                                                                                     C
         CTCATTTAACAT GTTA CAG GA  TTGAAATTG  TTAAC TCGTTACCAGGGA TTGATTTTTA GTAATGGTAACCAGGG  TTGAG AGTTTTG         ACCTA                    T CCCC    GTTA                                                                                                                     
TAAAGAATT            C    C   -  AA         AG     C             A          G                AG     T       CACGTTTAT     NANTTGYTYCTTWTCMCTSS -    NKGA    YCAYTAGAYTGACARAAAAGGGGAGAGTTGAAATTGAGGTTAACCTCGTTACTAGAAAGTTGAAATTGGGTTAACATCGTTACCAGGAAGGTTGTGTTGAGTGAAACTGTTTTAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End