Plant MITE

SE3020475

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_612
Malus domestica
SE3020475
Mutator
MadM11
MDC001250.283:32367-32529
TTGAAAAAA
TGTGRTATTCACA

Secondary structure and sequence

TSD TIR

5'

3'

TTGAAAAAAAYA    R    C   CACC  C        R       -    RT   T   RGGC   CG    GAATGAA
            TGTG TATT ACA    TC TTTTACTT TCACACA CCTT  TTA TTT    CGT  GATC       
            |||| |||| |||    || |||||||| ||||||| ||||  ||| |||    |||  ||||       T
            ACAT ATAG TGT    AG AAAATGAA AGTGTGT GGGA  AAT AAA    GTA  CTAG       
AAAAGTTACCCK    T    A   -STA  T        G       Y    AT   T   TARA   AA    AAGAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020475

TTGAAAAAAAYATGTGRTATTCACACACCTCCTTTTACTTRTCACACACCTTRTTTATTTTRGGCCGTCGGATCGAATGAATTGAAGAAGATCAAATGARATAAATTAATAAGGGYTGTGTGAGAAGTAAAATGAATSTGTAGATATTACAKCCCATTGAAAA

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