SE3020477

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_614
  • Malus domestica
  • SE3020477
  • Mutator
  • MadM10
  • MDC009601.412:1047-1246
  • CTTCAACAG
  • AGGGAGTAGGATTCTTTCCCCTCCTATTCTCATCCTCTTCCCTCCCCTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTCAAC      T                   T    --A   T          C   TCTCACACACTCATTTTT   TTAT  TCTCTATATAAAAATTAATATA
       AGGGAG AGGATTCTTTCCCCTCCTA TCTC   TCC CTTCCCTCCC TCC                  GTC    TG                      
       |||||| ||||||||||||||||||| ||||   ||| |||||||||| |||                  |||    ||                       
       TCCCTC TCCTAAGAGAGGGGAGGAT AGAG   AGG GAAGGGAGGG AGG                  CCA    AT                      
GACAACT      C                   T    AGA   -          A   ---------CTAAACTTG   ----  GCTAATTCGGTGCAGTTGTAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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