SE3020480

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_617
  • Malus domestica
  • SE3020480
  • Mutator
  • MadM19
  • MDC019747.177:1510-1726
  • GTCGGGTCC
  • GGTCCCGATCAAGATCCACTCCTGAACTAATGGTGAGGGTCCTCCTGAGCAAGTCAATCGAGCCGTTGAAATTTTATTCAACGGCTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCG  T     ----         A   C   AC   T         C             CA    A                       C     ACAGG   TTTCTC
    GG CCCGA    TCAAGATCC CTC TGA  TAA GGTGAGGGT CTCCTGAGCAAGT  ATCG GCCGTTGAAATTTTATTCAACGG TACAA     ATA      
    || |||||    ||||||||| ||| |||  ||| ||||||||| |||||||||||||  |||| ||||||||||||||||||||||| |||||     |||      T
    CC GGGCT    AGTTCTAGG GAG ACT  ATT CCACTCTTA GAGGACTCGTTCG  TAGC CGGCAACTTTAAAATAAGTTGCT ATGTT     TAT      
      T     GCCT         A   A   CA   C         A             AG    C                       A     AATAA   TGAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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